Displaying gems 1681 - 1710 of 3949 in total
Parse publications for gene names in a fuzzy fashion
Wrapper around the ExportPred algorithm for predicting P. falciparum exported proteins. Requires ...
Interface for express beta diversity file formats
A fast parser for FastQ files
longer description of your gem
Gadgets for bioinformatics
bio-gag is a biogem for detecting and correcting a particular type of error that occurs/occurred ...
Biogem is a software generator for those bioinformaticans who want to start coding an application...
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state between tw...
GFF3 (genome browser) information and digest mRNA and CDS sequences.
Options for low memory use a...
Ruby wrapper for the gff3-pltools.
A Ruby client for GGGenome the Ultrafast sequence search
Identify causative mutations in a model genome from NGS reads using the NGM method.
Library for visualizing genomic regions
A BioGem to submit jobs on a queue system
Encode any message string into a DNA sequence
Enables parsing of HMMER version 3 reports
Parse PFAM HMM definition files so that the models can be accessible programmatically
Hydropathy scale for BioRuby
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmaticly usefu...
A Jruby wrapper to Incanter lib
This gem has been yanked. Please contact me to get the namespace for greater use.
A bunch of useful classes for bioinformatics
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous data forma...
a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the exonerate ...
A bioruby plugin for calculating the isoelectric point of a protein
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's package
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README for details.
This biogem is built around Krona, a flashy way of representing hierarchical data.
A fast FASTA/FASTQ parser based on kseq.h by Heng Li