RubyGems.org

all gems

starting with B

Displaying gems 1711 - 1740 of 3979 in total

  1. 11,884 downloads
    bio-grid (0.3.3) A BioGem to submit jobs on a queue system
  2. 1,816 downloads
    bio-hello (0.0.0) Encode any message string into a DNA sequence
  3. 1,295 downloads
    bio-hmmer3_report (0.0.1) Enables parsing of HMMER version 3 reports
  4. 2,406 downloads
    bio-hmmer_model (0.0.2) Parse PFAM HMM definition files so that the models can be accessible programmatically
  5. 1,403 downloads
    bio-hydropathy (0.0.1) Hydropathy scale for BioRuby
  6. 956 downloads
    bio-img_metadata (0.0.1) Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmaticly usefu...
  7. 1,206 downloads
    bio-incanter (0.1.0) A Jruby wrapper to Incanter lib
  8. 991 downloads
    bioinfo (0.0.5) This gem has been yanked. Please contact me to get the namespace for greater use.
  9. 15,518 downloads
    bioinform (0.2.1) A bunch of useful classes for bioinformatics
  10. 6,247 downloads
    biointerchange (1.0.1) BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous data forma...
  11. 1,203 downloads
    bio-ipcress (0.0.1) a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the exonerate ...
  12. 6,159 downloads
    bio-isoelectric_point (0.1.3) A bioruby plugin for calculating the isoelectric point of a protein
  13. 3,520 downloads
    bio-kb-illumina (0.1.0) Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's package l...
  14. 5,801 downloads
    bio-kmer_counter (0.1.2) A biogem for counting small kmers for fingerprinting nucleotide sequences. See README for details.
  15. 2,342 downloads
    bio-krona (0.1.1) This biogem is built around Krona, a flashy way of representing hierarchical data.
  16. 167 downloads
    bio-kseq (0.0.2) A fast FASTA/FASTQ parser based on kseq.h by Heng Li
  17. 9,280 downloads
    biola_deploy (0.7.1) Designed to automate deployment of Rails applications using rake tasks
  18. 2,208 downloads
    biola_frontend_toolkit (0.2.0) this is a description
  19. 4,349 downloads
    bio-lazyblastxml (0.4.0) This is very scrappy at the moment, and will need to be seriously cleaned up. It does what I need...
  20. 1,201 downloads
    bio-liftover (1.3.0) Simple, under development Ruby solution for UCSC LiftOver tool
  21. 233 downloads
    bio-locus (0.0.2) A tool for fast querying and filtering of genome locations in VCF and other formats
  22. 11,397 downloads
    bio-logger (1.0.1) Log4r wrapper for BioRuby
  23. 13,906 downloads
    bio-maf (1.0.1) Multiple Alignment Format parser for BioRuby.
  24. 19,785 downloads
    biomart (0.2.3) A ruby API for interacting with Biomart XML based webservices.
  25. 130 downloads
    biome (0.0.1) WIP
  26. 1,567 downloads
    biomodel_client (0.1.0) Client package for creating, sending, recieving and consuming SOAP messages from BioModels search...
  27. 6,374 downloads
    bio-nexml (1.1.0) This plugin reads, writes and generates NeXML
  28. 5,484 downloads
    bio-ngs (0.5.2) bio-ngs provides a framework for handling NGS data with BioRuby
  29. 5,257 downloads
    bio-octopus (0.1.1) Running and parsing of the protein transmembrane domain predictor octopus
  30. 1,447 downloads
    bio-phyloxml (0.9.0) Provides PhyloXML support for BioRuby.