Displaying gems 1711 - 1740 of 3979 in total
A BioGem to submit jobs on a queue system
Encode any message string into a DNA sequence
Enables parsing of HMMER version 3 reports
Parse PFAM HMM definition files so that the models can be accessible programmatically
Hydropathy scale for BioRuby
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmaticly usefu...
A Jruby wrapper to Incanter lib
This gem has been yanked. Please contact me to get the namespace for greater use.
A bunch of useful classes for bioinformatics
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous data forma...
a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the exonerate ...
A bioruby plugin for calculating the isoelectric point of a protein
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's package
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README for details.
This biogem is built around Krona, a flashy way of representing hierarchical data.
A fast FASTA/FASTQ parser based on kseq.h by Heng Li
Designed to automate deployment of Rails applications using rake tasks
this is a description
This is very scrappy at the moment, and will need to be seriously cleaned up. It does what I need...
Simple, under development Ruby solution for UCSC LiftOver tool
A tool for fast querying and filtering of genome locations in VCF and other formats
Log4r wrapper for BioRuby
Multiple Alignment Format parser for BioRuby.
A ruby API for interacting with Biomart XML based webservices.
Client package for creating, sending, recieving and consuming SOAP messages from BioModels search...
This plugin reads, writes and generates NeXML
bio-ngs provides a framework for handling NGS data with BioRuby
Running and parsing of the protein transmembrane domain predictor octopus
Provides PhyloXML support for BioRuby.