Displaying gems 1741 - 1770 of 4066 in total
Parse PFAM HMM definition files so that the models can be accessible programmatically
Hydropathy scale for BioRuby
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmaticly usefu...
A Jruby wrapper to Incanter lib
This gem has been yanked. Please contact me to get the namespace for greater use.
A bunch of useful classes for bioinformatics
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous data forma...
a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the exonerate ...
A bioruby plugin for calculating the isoelectric point of a protein
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's package
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README for details.
This biogem is built around Krona, a flashy way of representing hierarchical data.
A fast FASTA/FASTQ parser based on kseq.h by Heng Li
Designed to automate deployment of Rails applications using rake tasks
this is a description
This is very scrappy at the moment, and will need to be seriously cleaned up. It does what I need...
Simple, under development Ruby solution for UCSC LiftOver tool
A tool for fast querying and filtering of genome locations in VCF and other formats
Log4r wrapper for BioRuby
Multiple Alignment Format parser for BioRuby.
A ruby API for interacting with Biomart XML based webservices.
Client package for creating, sending, recieving and consuming SOAP messages from BioModels search...
This plugin reads, writes and generates NeXML
bio-ngs provides a framework for handling NGS data with BioRuby
Running and parsing of the protein transmembrane domain predictor octopus
Provides PhyloXML support for BioRuby.
Pipeline to remove contaminations from EST libraries
Biopieces is a bioinformatic framework of tools easily used and easily created.
Iterate through a samtools pileup file