RubyGems.org

all gems

starting with B

Displaying gems 1741 - 1770 of 4077 in total

  1. 3,394 downloads
    bio-gngm (0.2.1) Identify causative mutations in a model genome from NGS reads using the NGM method.
  2. 6,085 downloads
    bio-graphics (1.4) Library for visualizing genomic regions
  3. 12,427 downloads
    bio-grid (0.3.3) A BioGem to submit jobs on a queue system
  4. 1,862 downloads
    bio-hello (0.0.0) Encode any message string into a DNA sequence
  5. 1,346 downloads
    bio-hmmer3_report (0.0.1) Enables parsing of HMMER version 3 reports
  6. 2,494 downloads
    bio-hmmer_model (0.0.2) Parse PFAM HMM definition files so that the models can be accessible programmatically
  7. 1,453 downloads
    bio-hydropathy (0.0.1) Hydropathy scale for BioRuby
  8. 1,000 downloads
    bio-img_metadata (0.0.1) Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmaticly usefu...
  9. 1,255 downloads
    bio-incanter (0.1.0) A Jruby wrapper to Incanter lib
  10. 1,041 downloads
    bioinfo (0.0.5) This gem has been yanked. Please contact me to get the namespace for greater use.
  11. 16,476 downloads
    bioinform (0.2.1) A bunch of useful classes for bioinformatics
  12. 6,607 downloads
    biointerchange (1.0.1) BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous data forma...
  13. 1,252 downloads
    bio-ipcress (0.0.1) a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the exonerate ...
  14. 6,352 downloads
    bio-isoelectric_point (0.1.3) A bioruby plugin for calculating the isoelectric point of a protein
  15. 3,610 downloads
    bio-kb-illumina (0.1.0) Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's package l...
  16. 6,078 downloads
    bio-kmer_counter (0.1.2) A biogem for counting small kmers for fingerprinting nucleotide sequences. See README for details.
  17. 2,481 downloads
    bio-krona (0.1.1) This biogem is built around Krona, a flashy way of representing hierarchical data.
  18. 224 downloads
    bio-kseq (0.0.2) A fast FASTA/FASTQ parser based on kseq.h by Heng Li
  19. 10,949 downloads
    biola_deploy (0.7.1) Designed to automate deployment of Rails applications using rake tasks
  20. 3,689 downloads
    biola_frontend_toolkit (0.3.1) this is a description
  21. 4,490 downloads
    bio-lazyblastxml (0.4.0) This is very scrappy at the moment, and will need to be seriously cleaned up. It does what I need...
  22. 1,386 downloads
    bio-liftover (1.3.0) Simple, under development Ruby solution for UCSC LiftOver tool
  23. 399 downloads
    bio-locus (0.0.6) A tool for fast querying and filtering of genome locations in VCF and other formats
  24. 11,982 downloads
    bio-logger (1.0.1) Log4r wrapper for BioRuby
  25. 14,480 downloads
    bio-maf (1.0.1) Multiple Alignment Format parser for BioRuby.
  26. 20,288 downloads
    biomart (0.2.3) A ruby API for interacting with Biomart XML based webservices.
  27. 198 downloads
    biome (0.0.1) WIP
  28. 1,612 downloads
    biomodel_client (0.1.0) Client package for creating, sending, recieving and consuming SOAP messages from BioModels search...
  29. 6,552 downloads
    bio-nexml (1.1.0) This plugin reads, writes and generates NeXML
  30. 5,663 downloads
    bio-ngs (0.5.2) bio-ngs provides a framework for handling NGS data with BioRuby