Displaying gems 1741 - 1770 of 3975 in total
Iterate through a samtools pileup file
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptides in Plas...
Server for polymarker. To be used with cron
Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid wheat
Supports linking of Models within a RoR application to a Concept and Ontology within the BioPortal
Primer3-related Ruby code - wrappers, Boulder IO, etc.
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPerl, except ...
framework for optimising any computational pipeline or program
A toolkit for publishing scientific results and datasets using RDF, OWL, and related technologies
Ruby tools and scripts for QTL mapping, part of the qtlHD project
Just a test
Store relationships in a triple-store, such as gene enrichment and QTL, and use this information ...
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
Digests DNA based on restriction enzyme cut patterns
A simple collection of useful Bioruby-related code. It is
similar in spirit to the BioRu...
BioRuby is a library for bioinformatics (biology + information science).
New Sambamba library comes with a command-line tool for working with SAM/BAM files. This gem brin...
Binder of samtools for ruby, on the top of FFI.
This project was born from the need to add su...
A minimal web service on the top of sinatra to query bam files
A simple gem to perform fast pairwise sequence alignment using seqan
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These entries a...
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, but seems ...
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This gem inclu...
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries functions...
Parses stockholm sequence alignment format
This bio-gem facilitates the creation of pretty, publication quality SVG images from feature data.
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alternative b...
Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/
Functions and tools for tranforming and changing tab delimited and comma separated table files - ...