Displaying gems 1771 - 1800 of 4011 in total
New Sambamba library comes with a command-line tool for working with SAM/BAM files. This gem brin...
Binder of samtools for ruby, on the top of FFI.
This project was born from the need to add su...
A minimal web service on the top of sinatra to query bam files
A simple gem to perform fast pairwise sequence alignment using seqan
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These entries a...
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, but seems ...
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This gem inclu...
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries functions...
Parses stockholm sequence alignment format
This bio-gem facilitates the creation of pretty, publication quality SVG images from feature data.
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alternative b...
Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/
Functions and tools for tranforming and changing tab delimited and comma separated table files - ...
Integrating several databases, data structure and algorithms, BioTCM is designed as a base gem to...
A bioruby plugin for interaction with the transmembrane predictor TMHMM
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWigSummary a...
BioRuby plugin for UniChem REST Web service
Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting
Parser to work with some file formats used in the velvet DNA assembler
Bindings to some internals of the velvet assembler.
Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is available at ht...
Create bitcoin payment requests easily
Agent to collect data for common server programs and push them to CopperEgg
Collector to gather CM based application metrics for bipbip
MongoMapper plugin for first-class documents that can also be embedded
IRB with added functions to require, load and reload files faster
A basic Ruby tree implementation with an optional C extension for speed.