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Displaying gems 1771 - 1800 of 4134 in total

bioinform 0.2.1

A bunch of useful classes for bioinformatics

17,159 Downloads

biointerchange 1.0.4

BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...

7,095 Downloads

bio-ipcress 0.0.1

a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the ...

1,286 Downloads

bio-isoelectric_point 0.1.3

A bioruby plugin for calculating the isoelectric point of a protein

6,485 Downloads

bio-kb-illumina 0.1.0

Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...

3,676 Downloads

bio-kmer_counter 0.1.2

A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...

6,274 Downloads

bio-krona 0.1.1

This biogem is built around Krona, a flashy way of representing hierarchical data.

2,585 Downloads

bio-kseq 0.0.2

A fast FASTA/FASTQ parser based on kseq.h by Heng Li

266 Downloads

biola_deploy 0.7.1

Designed to automate deployment of Rails applications using rake tasks

11,726 Downloads

biola_frontend_toolkit 0.4.0

this is a description

4,327 Downloads

biola_logs 0.1.0

Standardized, opinionated log formatting

119 Downloads

bio-lazyblastxml 0.4.0

This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...

4,584 Downloads

bio-liftover 1.3.0

Simple, under development Ruby solution for UCSC LiftOver tool

1,530 Downloads

bio-location-rdfize 0.0.0

This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...

110 Downloads

bio-locus 0.0.6

A tool for fast querying and filtering of genome locations in VCF and other formats

485 Downloads

bio-logger 1.0.1

Log4r wrapper for BioRuby

12,613 Downloads

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

14,900 Downloads

biomart 0.2.3

A ruby API for interacting with Biomart XML based webservices.

20,617 Downloads

biome 0.0.1

WIP

240 Downloads

biomodel_client 0.1.0

Client package for creating, sending, recieving and consuming SOAP messages from BioMod...

1,645 Downloads

bio-nexml 1.1.0

This plugin reads, writes and generates NeXML

6,678 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

5,766 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

5,493 Downloads

bio-old-biofetch-emulator 0.0.0

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...

104 Downloads

bio-phyloxml 0.9.0

Provides PhyloXML support for BioRuby.

1,533 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

8,158 Downloads

biopieces 0.3.5

Biopieces is a bioinformatic framework of tools easily used and easily created.

6,707 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

4,388 Downloads

bio-plasmoap 0.0.2

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

3,640 Downloads

bio-polymarker_db_batch 0.4.0

Server for polymarker. To be used with cron

1,352 Downloads