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Displaying gems 1801 - 1830 of 4144 in total

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

4,397 Downloads

bio-plasmoap 0.0.2

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

3,645 Downloads

bio-polymarker_db_batch 0.4.0

Server for polymarker. To be used with cron

1,376 Downloads

bio-polyploid-tools 0.5.2

Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...

3,239 Downloads

bioportal 2.2

Supports linking of Models within a RoR application to a Concept and Ontology within th...

6,368 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

107 Downloads

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

2,504 Downloads

biopsy 0.2.0

framework for optimising any computational pipeline or program

2,005 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

6,157 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

370 Downloads

bio-raxml 0.1.0

Just a test

768 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

3,385 Downloads

bio-repeatmasker 0.0.3

A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath

1,000 Downloads

bio-restriction_enzyme 1.0.0

Digests DNA based on restriction enzyme cut patterns

1,894 Downloads

bioroebe 0.0.48

A simple collection of useful Bioruby-related code. It is similar in spirit to...

16,822 Downloads

bioruby-bio 1.3.1.5000

BioRuby is a library for bioinformatics (biology + information science).

1,420 Downloads

bios 0.0.1

Coming soon!

1,716 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

6,396 Downloads

bio-samtools 2.2.0

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

28,151 Downloads

bio-samtools-server 0.1.2

A minimal web service on the top of sinatra to query bam files

708 Downloads

bioseqalign 0.0.2

A simple gem to perform fast pairwise sequence alignment using seqan

528 Downloads

bio-sge 0.0.0

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...

1,922 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

7,035 Downloads

bio-statsample-glm 0.1.1

Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...

1,297 Downloads

bio-statsample-timeseries 0.2.1

Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...

2,691 Downloads

bio-stockholm 0.0.1

Parses stockholm sequence alignment format

825 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

13,548 Downloads

bio-synreport 0.1.2

Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...

2,605 Downloads

bio-tabix 1.0.1

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

3,919 Downloads

bio-table 1.0.0

Functions and tools for tranforming and changing tab delimited and comma separated tabl...

8,834 Downloads