RubyGems Navigation menu

Gems

Displaying gems 1801 - 1830 of 4193 in total

biola_web_services 1.1.2

Simple Ruby wrapper for Biola Web Services REST calls

674 Downloads

bio-lazyblastxml 0.4.0

This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...

4,701 Downloads

bio-liftover 1.3.0

Simple, under development Ruby solution for UCSC LiftOver tool

1,680 Downloads

bio-location-rdfize 0.0.0

This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...

157 Downloads

bio-locus 0.0.6

A tool for fast querying and filtering of genome locations in VCF and other formats

566 Downloads

bio-logger 1.0.1

Log4r wrapper for BioRuby

13,164 Downloads

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

15,391 Downloads

biomart 0.2.3

A ruby API for interacting with Biomart XML based webservices.

21,012 Downloads

biome 0.0.1

WIP

279 Downloads

biomodel_client 0.1.0

Client package for creating, sending, recieving and consuming SOAP messages from BioMod...

1,679 Downloads

bio-nexml 1.1.0

This plugin reads, writes and generates NeXML

6,833 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

5,876 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

5,605 Downloads

bio-old-biofetch-emulator 0.0.0

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...

155 Downloads

bio-phyloxml 0.9.0

Provides PhyloXML support for BioRuby.

1,569 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

8,349 Downloads

biopieces 0.3.6

Biopieces is a bioinformatic framework of tools easily used and easily created.

7,565 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

4,502 Downloads

bio-plasmoap 0.0.2

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

3,713 Downloads

bio-polymarker_db_batch 0.4.0

Server for polymarker. To be used with cron

1,641 Downloads

bio-polyploid-tools 0.5.2

Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...

3,823 Downloads

bioportal 2.2

Supports linking of Models within a RoR application to a Concept and Ontology within th...

6,681 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

113 Downloads

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

2,581 Downloads

biopsy 0.2.0

framework for optimising any computational pipeline or program

2,152 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

6,476 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

374 Downloads

bio-raxml 0.1.0

Just a test

798 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

3,461 Downloads

bio-repeatmasker 0.0.3

A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath

1,072 Downloads