Digests DNA based on restriction enzyme cut patterns
A simple collection of useful Bioruby-related code. It is similar in spirit to...
BioRuby is a library for bioinformatics (biology + information science).
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
A minimal web service on the top of sinatra to query bam files
A simple gem to perform fast pairwise sequence alignment using seqan
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
Parses stockholm sequence alignment format
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/
Functions and tools for tranforming and changing tab delimited and comma separated tabl...
BioTCM is designed as the base gem to build advanced applications on Bioinformatics.
A bioruby plugin for interaction with the transmembrane predictor TMHMM
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWi...
BioRuby plugin for UniChem REST Web service
Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting
Parser to work with some file formats used in the velvet DNA assembler
Bindings to some internals of the velvet assembler.
Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...
Create bitcoin payment requests easily
Agent to collect data for common server programs and push them to CopperEgg
Collector to gather CM based application metrics for bipbip