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Displaying gems 1831 - 1860 of 4188 in total

bio-restriction_enzyme 1.0.0

Digests DNA based on restriction enzyme cut patterns

1,924 Downloads

bioroebe 0.0.48

A simple collection of useful Bioruby-related code. It is similar in spirit to...

18,232 Downloads

bioruby-bio 1.3.1.5000

BioRuby is a library for bioinformatics (biology + information science).

1,618 Downloads

bios 0.0.1

Coming soon!

1,742 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

6,549 Downloads

bio-samtools 2.2.0

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

29,321 Downloads

bio-samtools-server 0.1.2

A minimal web service on the top of sinatra to query bam files

770 Downloads

bioseqalign 0.0.2

A simple gem to perform fast pairwise sequence alignment using seqan

588 Downloads

bio-sge 0.0.0

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...

1,956 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

7,220 Downloads

bio-sra 0.2.0

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...

168 Downloads

bio-statsample-glm 0.1.1

Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...

1,352 Downloads

bio-statsample-timeseries 0.2.1

Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...

2,809 Downloads

bio-stockholm 0.0.1

Parses stockholm sequence alignment format

855 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

14,430 Downloads

bio-synreport 0.1.2

Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...

2,692 Downloads

bio-tabix 1.0.1

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

4,044 Downloads

bio-table 1.0.0

Functions and tools for tranforming and changing tab delimited and comma separated tabl...

9,118 Downloads

biotcm 0.2.0.pre

BioTCM is designed as the base gem to build advanced applications on Bioinformatics.

1,690 Downloads

bio-tm_hmm 0.2.2

A bioruby plugin for interaction with the transmembrane predictor TMHMM

6,883 Downloads

bio-ucsc-api 0.6.2

Ruby UCSC API: accessing the UCSC Genome Database using Ruby

21,515 Downloads

bio-ucsc-util 0.1.2

Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWi...

3,605 Downloads

bio-unichem 0.3.0

BioRuby plugin for UniChem REST Web service

2,821 Downloads

bio-vcf 0.8.1

Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting

2,317 Downloads

bio-velvet 0.4.2

Parser to work with some file formats used in the velvet DNA assembler

2,425 Downloads

bio-velvet_underground 0.1.0

Bindings to some internals of the velvet assembler.

829 Downloads

bio-wolf_psort_wrapper 0.0.3

Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...

2,965 Downloads

bip70 0.0.1

Create bitcoin payment requests easily

354 Downloads

bipbip 0.5.7

Agent to collect data for common server programs and push them to CopperEgg

14,686 Downloads

bipbip-cm 0.1.0

Collector to gather CM based application metrics for bipbip

275 Downloads