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Reverse dependencies for bio-logger Latest version of the following gems require bio-logger

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

53,368 Downloads

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

53,368 Downloads

bio-blastxmlparser 2.0.4

Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th...

52,671 Downloads

bio-gff3 0.9.1

GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...

45,957 Downloads

bio-table 1.0.0

Functions and tools for tranforming and changing tab delimited and comma separated tabl...

35,890 Downloads

bio-velvet 0.6.0

Parser to work with some file formats used in the velvet DNA assembler

26,304 Downloads

bio-bigbio 0.1.6

Fasta reader, ORF emitter, sequence translation

25,805 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

25,191 Downloads

bio-kmer_counter 0.1.2

A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...

24,407 Downloads

bio-commandeer 0.4.0

A dead simple method of running shell commands from within Ruby, by applying opinion

24,304 Downloads

finishm 0.0.9

De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...

20,565 Downloads

bio-velvet_underground 0.3.1

Bindings to some internals of the velvet assembler.

19,062 Downloads

divvy_proteomics 0.3.3

divvy up spectra from DTASelect files in a somewhat parsimonious way

18,873 Downloads

dirseq 0.4.3

FPKG (gene expression metric) calculator for metatranscriptomics

16,442 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

14,034 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

12,537 Downloads

bio-sra 0.3.1

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...

12,035 Downloads

SilkSlider 0.2.2

Predict silk-like proteins from its amino acid sequence.

10,755 Downloads

bio-core 0.0.1

Bioruby core plugins

9,921 Downloads

bio-gag 0.1.0

bio-gag is a biogem for detecting and correcting a particular type of error that occurs...

9,168 Downloads

bio-hmmer3_report 0.1.0

Enables programmatic parsing of HMMER version 3 reports

8,380 Downloads

bio-express_beta_diversity 0.1.0

Interface for express beta diversity file formats

7,766 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

2,607 Downloads

Total downloads 36,648

For this version 17,658

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