RubyGems Navigation menu

Reverse dependencies for bio-logger Latest version of the following gems require bio-logger

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

35,516 Downloads

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

35,516 Downloads

bio-blastxmlparser 2.0.4

Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th...

34,366 Downloads

bio-gff3 0.9.1

GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...

32,228 Downloads

bio-table 1.0.0

Functions and tools for tranforming and changing tab delimited and comma separated tabl...

23,498 Downloads

bio-bigbio 0.1.6

Fasta reader, ORF emitter, sequence translation

17,406 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

16,825 Downloads

bio-kmer_counter 0.1.2

A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...

15,959 Downloads

bio-velvet 0.6.0

Parser to work with some file formats used in the velvet DNA assembler

15,285 Downloads

bio-commandeer 0.4.0

A dead simple method of running shell commands from within Ruby, by applying opinion

11,657 Downloads

divvy_proteomics 0.3.3

divvy up spectra from DTASelect files in a somewhat parsimonious way

10,953 Downloads

bio-velvet_underground 0.3.1

Bindings to some internals of the velvet assembler.

10,708 Downloads

finishm 0.0.9

De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...

10,262 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

9,532 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

8,115 Downloads

bio-core 0.0.1

Bioruby core plugins

6,783 Downloads

bio-sra 0.3.1

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...

6,322 Downloads

bio-gag 0.1.0

bio-gag is a biogem for detecting and correcting a particular type of error that occurs...

6,035 Downloads

SilkSlider 0.2.2

Predict silk-like proteins from its amino acid sequence.

5,559 Downloads

bio-hmmer3_report 0.1.0

Enables programmatic parsing of HMMER version 3 reports

5,276 Downloads

dirseq 0.4.3

FPKG (gene expression metric) calculator for metatranscriptomics

5,020 Downloads

bio-express_beta_diversity 0.1.0

Interface for express beta diversity file formats

4,678 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

1,222 Downloads

Total downloads 27,085

For this version 13,475

Gemfile:
= Copy to clipboard Copied!

install:
=

Licenses:

N/A

Required Ruby Version: None

Links: