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bioの被依存性 Latest version of the following gems require bio

mspire 0.10.8.0

mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...

137,127 ダウンロード

rbbt-sources 3.1.51

Data sources like PubMed, Entrez Gene, or Gene Ontology

103,835 ダウンロード

bio-samtools 2.6.2

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

80,287 ダウンロード

snp-search 2.12.0

Use the snp-search tool to create, import, manipulate and query your SNP database

77,518 ダウンロード

bio-gadget 0.5.0

Gadgets for bioinformatics

53,537 ダウンロード

bio-polyploid-tools 1.2.0

Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat

53,023 ダウンロード

protk 1.4.4

Commandline tools for proteomics

51,469 ダウンロード

bio-ucsc-api 0.6.5

Ruby UCSC API: accessing the UCSC Genome Database using Ruby

49,028 ダウンロード

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

41,748 ダウンロード

bacterial-annotator 0.8.9

GEM to annotate bacterial genome sequence based on a reference genome and complete the ...

41,629 ダウンロード

parse_fasta 2.5.2

Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...

38,988 ダウンロード

transrate 1.0.1

a library and command-line tool for quality assessment of de-novo transcriptome assemblies

38,694 ダウンロード

ms-core 0.0.19

basic, shared functionality for mspire libraries.

36,077 ダウンロード

iroki 0.0.36

Command line app and library code for Iroki, a phylogenetic tree customization program.

35,071 ダウンロード

bio-gff3 0.9.1

GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...

31,952 ダウンロード

biointerchange 1.0.8

BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...

29,687 ダウンロード

bio-basespace-sdk 0.1.7

BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...

28,959 ダウンロード

crb-blast 0.6.9

See summary

26,268 ダウンロード

fasta_util 0.5.2

Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...

24,845 ダウンロード

bio-band 0.1.11

Data mining and machine learning algorithms for JRuby

23,905 ダウンロード

wrnap 1.2.2

A comprehensive wrapper w(RNA)pper for various RNA CLI programs.

23,527 ダウンロード

bio-faster 0.4.5

A fast parser for FastQ files

20,863 ダウンロード

rbfam 12.0.1.1

Light wrapper for RFam data in Ruby.

20,212 ダウンロード

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

20,210 ダウンロード

ulla 0.9.9.2

'ulla' is a program for calculating environment-specific substitution tables from user ...

19,994 ダウンロード

egor 0.9.0

'egor' is a program for calculating environment-specific substitution tables from user ...

18,378 ダウンロード

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

17,565 ダウンロード

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

17,565 ダウンロード

bio-dbla-classifier 0.7.1

Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags

17,550 ダウンロード

bio-bigbio 0.1.6

Fasta reader, ORF emitter, sequence translation

17,238 ダウンロード

累計ダウンロード数 295,806

現行バージョン 4,645

Gemfile:
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ライセンス:

Ruby

必要Rubyバージョン: >= 0

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