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Reverse dependencies for bio Latest version of the following gems require bio

bio-bigbio 0.1.6

Fasta reader, ORF emitter, sequence translation

17,250 Downloads

acnfp-trans-counter 0.2.0

A quick and dirty tool for analysis of transition and transversion frequency aross and ...

16,992 Downloads

acnfp-trans-counter 0.2.0

A quick and dirty tool for analysis of transition and transversion frequency aross and ...

16,992 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

16,668 Downloads

bio-tm_hmm 0.2.4

A bioruby plugin for interaction with the transmembrane predictor TMHMM

16,422 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

16,198 Downloads

bio-kmer_counter 0.1.2

A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...

15,800 Downloads

bio-polymarker_db_batch 0.5.1

Server for polymarker. To be used with cron

15,377 Downloads

scaffolder 0.5.0

Turns scaffolded contigs and annotations into a genome.

15,325 Downloads

bio-velvet 0.6.0

Parser to work with some file formats used in the velvet DNA assembler

15,081 Downloads

scaffolder-test-helpers 0.4.1

Useful Helper methods and classes for testing scaffolder.

14,802 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

14,379 Downloads

genevalidatorapp 2.1.8

A Web App wrapper for GeneValidator, a program for validating gene predictions.

14,353 Downloads

bio-assembly 0.1.0

bioruby plugin to parse, write, and manipulate assembly data

13,755 Downloads

bio-assembly 0.1.0

bioruby plugin to parse, write, and manipulate assembly data

13,755 Downloads

bio-isoelectric_point 0.1.3

A bioruby plugin for calculating the isoelectric point of a protein

13,366 Downloads

bio-nexml 1.1.0

This plugin reads, writes and generates NeXML

13,136 Downloads

sciruby-full 0.2.11

Scientific gems for Ruby. This is the full installation with rigid version constraints.

12,391 Downloads

scaffolder-annotation-locator 0.2.0

Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...

12,159 Downloads

genfrag 0.0.0.4

This is a development release. Some features are functional at this time. Genfrag allo...

11,883 Downloads

bio-fasta_retrieve 0.0.7

Gem that helps to retrieve DNA sequence from UCSC

11,662 Downloads

bio-genomic-interval 0.1.2

a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...

11,602 Downloads

bio-graphics 1.4

Library for visualizing genomic regions

11,394 Downloads

bio-cd-hit-report 0.1.0

A Ruby library for reading CD-HIT cluster reports

10,868 Downloads

bio-velvet_underground 0.3.1

Bindings to some internals of the velvet assembler.

10,552 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

10,550 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

10,550 Downloads

finishm 0.0.9

De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...

10,075 Downloads

semin-ulla 0.9.9.1

'ulla' is a program for calculating environment-specific substitution tables from user ...

10,015 Downloads

bio-bwa 0.2.2

Ruby binding for BWA mapping software, built using Ruby-FFI library

9,972 Downloads

Total downloads 298,536

For this version 4,989

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License:

Ruby

Required Ruby Version: >= 0

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