Reverse dependencies for bio Latest version of the following gems require bio
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
17,250 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
16,992 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
16,992 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
16,668 Downloads
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
16,422 Downloads
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
16,198 Downloads
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
15,800 Downloads
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
15,377 Downloads
scaffolder 0.5.0
Turns scaffolded contigs and annotations into a genome.
15,325 Downloads
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
15,081 Downloads
scaffolder-test-helpers 0.4.1
Useful Helper methods and classes for testing scaffolder.
14,802 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
14,379 Downloads
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
14,353 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
13,755 Downloads
bio-assembly 0.1.0
bioruby plugin to parse, write, and manipulate assembly data
13,755 Downloads
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
13,366 Downloads
bio-nexml 1.1.0
This plugin reads, writes and generates NeXML
13,136 Downloads
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
12,391 Downloads
scaffolder-annotation-locator 0.2.0
Build a genome scaffold using scaffolder and a set of annotated contigs. This tool upda...
12,159 Downloads
genfrag 0.0.0.4
This is a development release. Some features are functional at this time. Genfrag allo...
11,883 Downloads
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
11,662 Downloads
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
11,602 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
11,394 Downloads
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
10,868 Downloads
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
10,552 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
10,550 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
10,550 Downloads
finishm 0.0.9
De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving ...
10,075 Downloads
semin-ulla 0.9.9.1
'ulla' is a program for calculating environment-specific substitution tables from user ...
10,015 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
9,972 Downloads