A tool for fast querying and filtering of genome locations in VCF and other formats
Log4r wrapper for BioRuby
Multiple Alignment Format parser for BioRuby.
A ruby API for interacting with Biomart XML based webservices.
Client package for creating, sending, recieving and consuming SOAP messages from BioMod...
Help for working with the output of the .delta files produced by nucmer and promer
This plugin reads, writes and generates NeXML
bio-ngs provides a framework for handling NGS data with BioRuby
Running and parsing of the protein transmembrane domain predictor octopus
Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...
Provides PhyloXML support for BioRuby.
Pipeline to remove contaminations from EST libraries
Biopieces is a bioinformatic framework of tools easily used and easily created.
Iterate through a samtools pileup file
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
Server for polymarker. To be used with cron
Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...
Supports linking of Models within a RoR application to a Concept and Ontology within th...
Primer3-related Ruby code - wrappers, Boulder IO, etc.
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
framework for optimising any computational pipeline or program
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
Ruby tools and scripts for QTL mapping, part of the qtlHD project
Just a test
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
Digests DNA based on restriction enzyme cut patterns
Detecting and quantifying functional genes in short-read metagenomic datasets
A simple collection of useful Bioruby-related code. It is similar in spirit to the ...