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Displaying gems 1861 - 1890 of 4344 in total

bio-locus 0.0.6

A tool for fast querying and filtering of genome locations in VCF and other formats

841 Downloads

bio-logger 1.0.1

Log4r wrapper for BioRuby

14,301 Downloads

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

17,039 Downloads

biomart 0.2.3

A ruby API for interacting with Biomart XML based webservices.

22,265 Downloads

biome 0.0.1

WIP

423 Downloads

biomodel_client 0.1.0

Client package for creating, sending, recieving and consuming SOAP messages from BioMod...

1,804 Downloads

bio-mummer 0.1.0

Help for working with the output of the .delta files produced by nucmer and promer

149 Downloads

bio-nexml 1.1.0

This plugin reads, writes and generates NeXML

7,348 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

6,279 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

5,975 Downloads

bio-old-biofetch-emulator 0.0.0

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...

306 Downloads

bio-phyloxml 0.9.0

Provides PhyloXML support for BioRuby.

1,699 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

8,966 Downloads

biopieces 0.4.0

Biopieces is a bioinformatic framework of tools easily used and easily created.

10,686 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

4,887 Downloads

bio-plasmoap 0.0.2

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

3,969 Downloads

bio-polymarker_db_batch 0.4.0

Server for polymarker. To be used with cron

2,576 Downloads

bio-polyploid-tools 0.6.0

Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...

5,920 Downloads

bioportal 2.2

Supports linking of Models within a RoR application to a Concept and Ontology within th...

7,151 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

140 Downloads

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

2,829 Downloads

biopsy 0.2.0

framework for optimising any computational pipeline or program

2,674 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

7,595 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

395 Downloads

bio-raxml 0.1.0

Just a test

933 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

3,733 Downloads

bio-repeatmasker 0.0.3

A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath

1,322 Downloads

bio-restriction_enzyme 1.0.0

Digests DNA based on restriction enzyme cut patterns

2,063 Downloads

bio-rocker 0.1.01

Detecting and quantifying functional genes in short-read metagenomic datasets

386 Downloads

bioroebe 0.0.59

A simple collection of useful Bioruby-related code. It is similar in spirit to the ...

26,132 Downloads