Encode any message string into a DNA sequence
Enables parsing of HMMER version 3 reports
Parse PFAM HMM definition files so that the models can be accessible programmatically
Hydropathy scale for BioRuby
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmat...
A Jruby wrapper to Incanter lib
This gem has been yanked. Please contact me to get the namespace for greater use.
A bunch of useful classes for bioinformatics
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the ...
A bioruby plugin for calculating the isoelectric point of a protein
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
This biogem is built around Krona, a flashy way of representing hierarchical data.
A fast FASTA/FASTQ parser based on kseq.h by Heng Li
Designed to automate deployment of Rails applications using rake tasks
this is a description
Standardized, opinionated log formatting
Reusable UX components for use in or WCMS projects
Simple Ruby wrapper for Biola Web Services REST calls
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
Simple, under development Ruby solution for UCSC LiftOver tool
This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...
A tool for fast querying and filtering of genome locations in VCF and other formats
Log4r wrapper for BioRuby
Multiple Alignment Format parser for BioRuby.
A ruby API for interacting with Biomart XML based webservices.
Client package for creating, sending, recieving and consuming SOAP messages from BioMod...
Help for working with the output of the .delta files produced by nucmer and promer