RubyGems Navigation menu

Gems

Displaying gems 1861 - 1890 of 4500 in total

bio 1.4.3.0001

BioRuby is a library for bioinformatics (biology + information science).

91,772 Downloads

bio-affy 0.5.1

Affymetrix microarray file format parser (CEL/CDF) for Ruby. FFI binding to Biolib po...

3,898 Downloads

bio-alignment 0.0.8

Alignment handler for multiple sequence alignments (MSA)

11,118 Downloads

bio-aliphatic_index 0.0.1

A simple biogem that allows computation of the aliphatic index of a protein

1,746 Downloads

bio-assembly 0.1.0

bioruby plugin to parse, write, and manipulate assembly data

8,196 Downloads

bio-band 0.1.11

Data mining and machine learning algorithms for JRuby

9,838 Downloads

bio-basespace-sdk 0.1.7

BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...

5,721 Downloads

bio-bgzf 0.2.1

This library provides support for BGZF (Blocked GZip Format) in Ruby. BGZF, originally ...

5,973 Downloads

bio-bigbio 0.1.6

Fasta reader, ORF emitter, sequence translation

9,110 Downloads

bio-biolinux 0.1.0

Meta package for BioLinux distribution: bio-core, bio-core-ext

1,852 Downloads

bio-biostars-analytics 0.2.0

Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...

1,868 Downloads

bio-blastxmlparser 2.0.3

Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th...

15,079 Downloads

bio-blat-tools 0.1.0

Tools to manipulate blat files from the command line. Uses the Bio::Blat object from Bi...

447 Downloads

bio-bwa 0.2.2

Ruby binding for BWA mapping software, built using Ruby-FFI library

5,573 Downloads

bio-cd-hit-report 0.1.0

A Ruby library for reading CD-HIT cluster reports

5,179 Downloads

bio-chembl 0.1.3

BioRuby plugin for ChEMBL REST API Client, Parser and Container classes

4,278 Downloads

bio-cigar 0.1.0

A parser for CIGAR format alignments.

1,384 Downloads

bio-cnls_screenscraper 0.3.0

Programmatic interface to the cNLS nuclear localisation signal prediction software

3,456 Downloads

bio-commandeer 0.1.0

A dead simple method of running shell commands from within Ruby, by applying opinion

1,550 Downloads

bio-core 0.0.1

Bioruby core plugins

3,621 Downloads

bio-core-ext 0.0.1

BioRuby plugins with dependecies from external library or tools

1,874 Downloads

bio-data-restriction_enzyme 1.109.0

Restriction Enzyme Dataset from REBASE in yaml form

1,865 Downloads

biodb 2.1.0

Short for BioTCM::Databases

4,452 Downloads

bio-dbla-classifier 0.7.1

Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags

9,535 Downloads

bio-dbsnp 0.1.1

decoding the dbSNP bitfield containg detaild information

1,811 Downloads

biodiversity 3.1.10

Tools for biodiversity informatics

49,920 Downloads

biodiversity19 3.1.7

Tools for biodiversity informatics

74,251 Downloads

bio-emboss_six_frame_nucleotide_sequences 0.1.0

a method to get the nucleotide sequence of translations done by the EMBOSS bioinformati...

1,902 Downloads

bio-ensembl 1.1.0

This API provides a complete set of methods and classes to access the Ensembl database ...

1,836 Downloads

bio-ensembl-rest 0.2.0

A Ruby library for the RESTful Ensembl API.

1,840 Downloads