A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
This biogem is built around Krona, a flashy way of representing hierarchical data.
A fast FASTA/FASTQ parser based on kseq.h by Heng Li
Designed to automate deployment of Rails applications using rake tasks
this is a description
Standardized, opinionated log formatting
Reusable UX components for use in or WCMS projects
Simple Ruby wrapper for Biola Web Services REST calls
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
Simple, under development Ruby solution for UCSC LiftOver tool
This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...
A tool for fast querying and filtering of genome locations in VCF and other formats
Log4r wrapper for BioRuby
Multiple Alignment Format parser for BioRuby.
A ruby API for interacting with Biomart XML based webservices.
Client package for creating, sending, recieving and consuming SOAP messages from BioMod...
Help for working with the output of the .delta files produced by nucmer and promer
This plugin reads, writes and generates NeXML
bio-ngs provides a framework for handling NGS data with BioRuby
Running and parsing of the protein transmembrane domain predictor octopus
Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...
Provides PhyloXML support for BioRuby.
Pipeline to remove contaminations from EST libraries
API of Picard tool
Biopieces is a bioinformatic framework of tools easily used and easily created.
Iterate through a samtools pileup file
A pipeline manager
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
Server for polymarker. To be used with cron