RubyGems Navigation menu

Gems

Displaying gems 1921 - 1950 of 4503 in total

bio-kb-illumina 0.1.0

Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...

4,204 Downloads

bio-kmer_counter 0.1.2

A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...

7,801 Downloads

bio-krona 0.1.1

This biogem is built around Krona, a flashy way of representing hierarchical data.

3,371 Downloads

bio-kseq 0.0.2

A fast FASTA/FASTQ parser based on kseq.h by Heng Li

554 Downloads

biola_deploy 0.7.1

Designed to automate deployment of Rails applications using rake tasks

17,513 Downloads

biola_frontend_toolkit 0.4.4

this is a description

8,155 Downloads

biola_logs 0.1.0

Standardized, opinionated log formatting

776 Downloads

biola_wcms_components 0.9.0

Reusable UX components for use in or WCMS projects

2,610 Downloads

biola_web_services 1.1.3

Simple Ruby wrapper for Biola Web Services REST calls

3,256 Downloads

bio-lazyblastxml 0.4.0

This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...

5,375 Downloads

bio-liftover 1.3.0

Simple, under development Ruby solution for UCSC LiftOver tool

2,565 Downloads

bio-location-rdfize 0.0.0

This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...

415 Downloads

bio-locus 0.0.6

A tool for fast querying and filtering of genome locations in VCF and other formats

1,043 Downloads

bio-logger 1.0.1

Log4r wrapper for BioRuby

15,121 Downloads

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

18,265 Downloads

biomart 0.2.3

A ruby API for interacting with Biomart XML based webservices.

23,259 Downloads

biome 0.0.1

WIP

527 Downloads

biomodel_client 0.1.0

Client package for creating, sending, recieving and consuming SOAP messages from BioMod...

1,899 Downloads

bio-mummer 0.2.1

Help for working with the output of the .delta files produced by nucmer and promer

649 Downloads

bio-nexml 1.1.0

This plugin reads, writes and generates NeXML

7,745 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

6,663 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

6,265 Downloads

bio-old-biofetch-emulator 0.0.0

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...

415 Downloads

bio-phyloxml 0.9.0

Provides PhyloXML support for BioRuby.

1,794 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

9,447 Downloads

bio-picard 1.131.5

API of Picard tool

253 Downloads

biopieces 0.4.2

Biopieces is a bioinformatic framework of tools easily used and easily created.

13,398 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

5,180 Downloads

bio-pipengine 0.6.0

A pipeline manager

208 Downloads

bio-plasmoap 0.0.2

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

4,171 Downloads