Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...
Provides PhyloXML support for BioRuby.
Pipeline to remove contaminations from EST libraries
API of Picard tool
Biopieces is a bioinformatic framework of tools easily used and easily created.
Iterate through a samtools pileup file
A pipeline manager
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
Server for polymarker. To be used with cron
Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...
Supports linking of Models within a RoR application to a Concept and Ontology within th...
Primer3-related Ruby code - wrappers, Boulder IO, etc.
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
framework for optimising any computational pipeline or program
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
Ruby tools and scripts for QTL mapping, part of the qtlHD project
Just a test
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
Digests DNA based on restriction enzyme cut patterns
Detecting and quantifying functional genes in short-read metagenomic datasets
A simple collection of useful Bioruby-related code. It is similar in spirit to the ...
BioRuby is a library for bioinformatics (biology + information science).
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
A minimal web service on the top of sinatra to query bam files
A simple gem to perform fast pairwise sequence alignment using seqan
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...