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Displaying gems 1981 - 2010 of 4589 in total

bio-phyloxml 0.9.0

Provides PhyloXML support for BioRuby.

1,838 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

9,628 Downloads

bio-picard 1.131.5

API of Picard tool

316 Downloads

biopieces 0.5.4

Biopieces is a bioinformatic framework of tools easily used and easily created.

14,922 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

5,284 Downloads

bio-pipengine 0.6.0

A pipeline manager

262 Downloads

bio-plasmoap 0.0.2

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

4,250 Downloads

bio-polymarker_db_batch 0.5.1

Server for polymarker. To be used with cron

4,072 Downloads

bio-polyploid-tools 0.7.2

Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...

9,320 Downloads

bioportal 2.2

Supports linking of Models within a RoR application to a Concept and Ontology within th...

7,786 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

175 Downloads

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

3,095 Downloads

biopsy 0.2.1

framework for optimising any computational pipeline or program

3,428 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

8,786 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

421 Downloads

bio-raxml 0.1.0

Just a test

1,068 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

4,021 Downloads

bio-repeatmasker 0.0.3

A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath

1,582 Downloads

bio-restriction_enzyme 1.0.0

Digests DNA based on restriction enzyme cut patterns

2,204 Downloads

bio-rocker 1.0.0

Detecting and quantifying functional genes in short-read metagenomic datasets

3,538 Downloads

bioroebe 0.0.76

A simple collection of useful Bioruby-related code. It is similar in spirit to the ...

30,553 Downloads

bioruby-bio 1.3.1.5000

BioRuby is a library for bioinformatics (biology + information science).

3,284 Downloads

bios 0.0.1

Coming soon!

2,013 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

7,863 Downloads

bio-samtools 2.3.3

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

39,769 Downloads

bio-samtools-server 0.1.2

A minimal web service on the top of sinatra to query bam files

1,328 Downloads

bioseqalign 0.0.3

A simple gem to perform fast pairwise sequence alignment using seqan

1,418 Downloads

bio-sge 0.0.0

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...

2,210 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

8,831 Downloads

bio-sra 0.2.0

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...

810 Downloads