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Displaying gems 2011 - 2040 of 4687 in total

bio-mummer 0.2.1

Help for working with the output of the .delta files produced by nucmer and promer

1,061 Downloads

bio-nexml 1.1.0

This plugin reads, writes and generates NeXML

8,187 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

7,281 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

6,616 Downloads

bio-old-biofetch-emulator 0.0.0

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...

544 Downloads

bio-phyloxml 0.9.0

Provides PhyloXML support for BioRuby.

1,928 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

10,007 Downloads

bio-picard 1.131.5

API of Picard tool

417 Downloads

biopieces 0.5.6

Biopieces is a bioinformatic framework of tools easily used and easily created.

17,818 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

5,523 Downloads

bio-pipengine 0.6.0

A pipeline manager

370 Downloads

bio-plasmoap 0.0.2

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

4,416 Downloads

bio-polymarker_db_batch 0.5.1

Server for polymarker. To be used with cron

4,777 Downloads

bio-polyploid-tools 0.7.3

Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...

11,100 Downloads

bioportal 2.2

Supports linking of Models within a RoR application to a Concept and Ontology within th...

8,047 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

225 Downloads

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

3,252 Downloads

biopsy 0.2.1

framework for optimising any computational pipeline or program

4,062 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

9,471 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

469 Downloads

bio-raxml 0.1.0

Just a test

1,159 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

4,231 Downloads

bio-repeatmasker 0.0.3

A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath

1,745 Downloads

bio-restriction_enzyme 1.0.0

Digests DNA based on restriction enzyme cut patterns

2,289 Downloads

bio-rocker 1.0.0

Detecting and quantifying functional genes in short-read metagenomic datasets

4,329 Downloads

bioroebe 0.0.95

This project is called BioRoebe. The name insinuates that it has to do with "bio"-s...

35,171 Downloads

bioruby-bio 1.3.1.5000

BioRuby is a library for bioinformatics (biology + information science).

3,770 Downloads

bios 0.0.1

Coming soon!

2,100 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

8,250 Downloads

bio-samtools 2.3.3

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

41,968 Downloads