RubyGems Navigation menu

Gems

Displaying gems 2011 - 2040 of 4647 in total

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

3,154 Downloads

biopsy 0.2.1

framework for optimising any computational pipeline or program

3,604 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

9,048 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

426 Downloads

bio-raxml 0.1.0

Just a test

1,102 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

4,087 Downloads

bio-repeatmasker 0.0.3

A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath

1,642 Downloads

bio-restriction_enzyme 1.0.0

Digests DNA based on restriction enzyme cut patterns

2,232 Downloads

bio-rocker 1.0.0

Detecting and quantifying functional genes in short-read metagenomic datasets

3,840 Downloads

bioroebe 0.0.83

This project is called BioRoebe. The name insinuates that it has to do with "bio"-s...

31,929 Downloads

bioruby-bio 1.3.1.5000

BioRuby is a library for bioinformatics (biology + information science).

3,479 Downloads

bios 0.0.1

Coming soon!

2,037 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

8,013 Downloads

bio-samtools 2.3.3

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

40,666 Downloads

bio-samtools-server 0.1.2

A minimal web service on the top of sinatra to query bam files

1,395 Downloads

bioseqalign 0.0.3

A simple gem to perform fast pairwise sequence alignment using seqan

1,522 Downloads

bio-sge 0.0.0

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...

2,238 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

9,003 Downloads

bio-sra 0.2.0

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...

879 Downloads

biostars-api 0.1.4

Gem wrapping biostars.org public API

1,266 Downloads

bio-statsample-glm 0.1.1

Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...

1,941 Downloads

bio-statsample-timeseries 0.2.1

Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...

3,960 Downloads

bio-stockholm 0.0.1

Parses stockholm sequence alignment format

1,169 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

22,143 Downloads

bio-synreport 0.1.2

Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...

3,586 Downloads

bio-tabix 1.0.1

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

5,188 Downloads

bio-table 1.0.0

Functions and tools for tranforming and changing tab delimited and comma separated tabl...

11,760 Downloads

biotcm 0.3.0

BioTCM is designed as a base gem to build advanced bioinformatics applications.

2,765 Downloads

biotcm-lmma 0.2.0

A combined literature mining and microarray analysis approach to construct gene network...

296 Downloads

bio-tm_hmm 0.2.2

A bioruby plugin for interaction with the transmembrane predictor TMHMM

8,356 Downloads