Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
framework for optimising any computational pipeline or program
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
Ruby tools and scripts for QTL mapping, part of the qtlHD project
Just a test
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
Digests DNA based on restriction enzyme cut patterns
Detecting and quantifying functional genes in short-read metagenomic datasets
This project is called BioRoebe. The name insinuates that it has to do with "bio"-s...
BioRuby is a library for bioinformatics (biology + information science).
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
A minimal web service on the top of sinatra to query bam files
A simple gem to perform fast pairwise sequence alignment using seqan
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
Gem wrapping biostars.org public API
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
Parses stockholm sequence alignment format
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/
Functions and tools for tranforming and changing tab delimited and comma separated tabl...
BioTCM is designed as a base gem to build advanced bioinformatics applications.
A combined literature mining and microarray analysis approach to construct gene network...
A bioruby plugin for interaction with the transmembrane predictor TMHMM