Parses stockholm sequence alignment format
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/
Functions and tools for tranforming and changing tab delimited and comma separated tabl...
BioTCM is designed as a base gem to build advanced bioinformatics applications.
A combined literature mining and microarray analysis approach to construct gene network...
A bioruby plugin for interaction with the transmembrane predictor TMHMM
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWi...
BioRuby plugin for UniChem REST Web service
Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting
Parser to work with some file formats used in the velvet DNA assembler
Bindings to some internals of the velvet assembler.
Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...
Create bitcoin payment requests easily
Finds maximum matchings in weighted bipartite graphs
Agent to collect data for common server programs and push them to CopperEgg
bipbop is the best service for consulting brazilian data. See http://bipbop.com.br/ for...
MongoMapper plugin for first-class documents that can also be embedded
IRB with added functions to require, load and reload files faster
A basic Ruby tree implementation with an optional C extension for speed.
Description of Bird.
birdbath makes testing your migrations easier by adding helper methods to Test::Unit::...
Evented Twitter Library of Doom
A Ruby Web API Framework for CollectionJSON (and maybe more in the future).
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Simple decorators for Ruby on Rails.