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Displaying gems 2161 - 2190 of 5015 in total

bioruby-bio 1.3.1.5000

BioRuby is a library for bioinformatics (biology + information science).

4,821 Downloads

bios 0.0.1

Coming soon!

2,345 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

9,148 Downloads

bio-sam-mutation 0.4.1

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...

97 Downloads

bio-samtools 2.3.3

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

46,912 Downloads

bio-samtools-server 0.1.2

A minimal web service on the top of sinatra to query bam files

1,920 Downloads

bioseqalign 0.0.3

A simple gem to perform fast pairwise sequence alignment using seqan

2,248 Downloads

bio-sge 0.0.0

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...

2,539 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

10,343 Downloads

bio-sra 0.3.1

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...

1,824 Downloads

biostars-api 0.1.4

Gem wrapping biostars.org public API

2,241 Downloads

bio-statsample-glm 0.1.1

Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...

2,448 Downloads

bio-statsample-timeseries 0.2.1

Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...

4,868 Downloads

bio-stockholm 0.0.1

Parses stockholm sequence alignment format

1,481 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

25,726 Downloads

bio-synreport 0.1.2

Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...

4,280 Downloads

bio-tabix 1.0.1

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

6,129 Downloads

bio-table 1.0.0

Functions and tools for tranforming and changing tab delimited and comma separated tabl...

13,797 Downloads

biotcm 0.4.0

BioTCM is designed as a base gem to build advanced bioinformatics applications.

3,669 Downloads

bio-tm_hmm 0.2.2

A bioruby plugin for interaction with the transmembrane predictor TMHMM

9,489 Downloads

bio-ucsc-api 0.6.2

Ruby UCSC API: accessing the UCSC Genome Database using Ruby

30,102 Downloads

bio-ucsc-util 0.1.2

Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWi...

5,183 Downloads

bio-unichem 0.3.0

BioRuby plugin for UniChem REST Web service

4,394 Downloads

bio-vcf 0.9.2

Smart lazy multi-threaded parser for VCF format with useful filtering and output rewrit...

7,670 Downloads

bio-velvet 0.6.0

Parser to work with some file formats used in the velvet DNA assembler

6,757 Downloads

bio-velvet_underground 0.3.0

Bindings to some internals of the velvet assembler.

3,865 Downloads

bio-wolf_psort_wrapper 0.0.3

Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...

4,070 Downloads

bip70 0.0.1

Create bitcoin payment requests easily

993 Downloads

bipartite_graph 0.0.4

Finds maximum matchings in weighted bipartite graphs

2,466 Downloads

bipbip 0.6.15

Agent to collect data for common server programs and push them to CopperEgg

51,011 Downloads