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Displaying gems 2191 - 2220 of 5180 in total

bio-lazyblastxml 0.4.0

This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...

6,680 Downloads

bio-liftover 1.3.0

Simple, under development Ruby solution for UCSC LiftOver tool

4,202 Downloads

bio-location-rdfize 0.0.0

This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...

973 Downloads

bio-locus 0.0.7

A tool for fast querying and filtering of genome locations in VCF and other formats

2,579 Downloads

bio-logger 1.0.1

Log4r wrapper for BioRuby

18,491 Downloads

bio-maf 1.0.1

Multiple Alignment Format parser for BioRuby.

23,413 Downloads

biomart 0.2.3

A ruby API for interacting with Biomart XML based webservices.

27,370 Downloads

biome 0.0.1

WIP

1,074 Downloads

biomodel_client 0.1.0

Client package for creating, sending, recieving and consuming SOAP messages from BioMod...

2,410 Downloads

bio-mummer 0.2.1

Help for working with the output of the .delta files produced by nucmer and promer

2,035 Downloads

bio-nexml 1.1.0

This plugin reads, writes and generates NeXML

9,351 Downloads

bio-ngs 0.5.2

bio-ngs provides a framework for handling NGS data with BioRuby

9,892 Downloads

bio-octopus 0.1.1

Running and parsing of the protein transmembrane domain predictor octopus

7,578 Downloads

bio-old-biofetch-emulator 0.0.0

Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...

967 Downloads

bio-phyloxml 0.9.0

Provides PhyloXML support for BioRuby.

2,310 Downloads

bio-phyta 0.9.4

Pipeline to remove contaminations from EST libraries

11,522 Downloads

bio-picard 1.131.5

API of Picard tool

883 Downloads

bio-pileup_iterator 0.0.4

Iterate through a samtools pileup file

6,463 Downloads

bio-pipengine 0.9.2

A pipeline manager

1,899 Downloads

bio-plasmoap 0.1.1

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

5,338 Downloads

bio-plates 0.2.0

Methods for handling multiwell plate annotations, includes ranges and quadrants

392 Downloads

bio-polymarker_db_batch 0.5.1

Server for polymarker. To be used with cron

7,388 Downloads

bio-polyploid-tools 0.7.3

Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid w...

17,317 Downloads

bioportal 2.2

Supports linking of Models within a RoR application to a Concept and Ontology within th...

9,117 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

482 Downloads

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

3,915 Downloads

biopsy 0.3.0

framework for optimising any computational pipeline or program

7,159 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

12,132 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

715 Downloads

bio-raxml 0.1.0

Just a test

1,582 Downloads