RubyGems Navigation menu

Gems

Displaying gems 2251 - 2280 of 5229 in total

bio-sam-mutation 0.4.1

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...

370 Downloads

bio-samtools 2.4.0

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

51,022 Downloads

bio-samtools-server 0.1.2

A minimal web service on the top of sinatra to query bam files

2,257 Downloads

bioseqalign 0.0.4

A simple gem to perform fast pairwise sequence alignment using seqan

2,943 Downloads

bio-sge 0.0.0

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...

2,723 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

11,244 Downloads

bio-sparql-client 0.0.1

A ruby wrapper for bio SPARQL service

434 Downloads

bio-sra 0.3.1

A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...

2,465 Downloads

biostars-api 0.1.4

Gem wrapping biostars.org public API

2,888 Downloads

bio-statsample-glm 0.1.1

Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...

2,752 Downloads

bio-statsample-timeseries 0.2.1

Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...

5,472 Downloads

bio-stockholm 0.0.1

Parses stockholm sequence alignment format

1,703 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

27,966 Downloads

bio-synreport 0.1.2

Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...

4,765 Downloads

bio-tabix 1.0.1

Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/

6,816 Downloads

bio-table 1.0.0

Functions and tools for tranforming and changing tab delimited and comma separated tabl...

15,109 Downloads

biotcm 0.8.1

BioTCM is designed as a base gem to build advanced bioinformatics applications.

4,613 Downloads

bio-tm_hmm 0.2.2

A bioruby plugin for interaction with the transmembrane predictor TMHMM

10,198 Downloads

bio-ucsc-api 0.6.2

Ruby UCSC API: accessing the UCSC Genome Database using Ruby

32,551 Downloads

bio-ucsc-util 0.1.2

Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWi...

5,640 Downloads

bio-unichem 0.3.0

BioRuby plugin for UniChem REST Web service

4,868 Downloads

bio-vcf 0.9.2

Smart lazy multi-threaded parser for VCF format with useful filtering and output rewrit...

9,908 Downloads

bio-velvet 0.6.0

Parser to work with some file formats used in the velvet DNA assembler

7,905 Downloads

bio-velvet_underground 0.3.0

Bindings to some internals of the velvet assembler.

4,710 Downloads

bio-wolf_psort_wrapper 0.0.3

Enables the localisation predictor WoLF PSORT to be run locally. The algorithm is avail...

4,428 Downloads

bip70 0.0.1

Create bitcoin payment requests easily

1,203 Downloads

bipartite_graph 0.0.4

Finds maximum matchings in weighted bipartite graphs

3,147 Downloads

bipbip 0.6.20

Agent to collect data for common server programs and push them to CopperEgg

63,362 Downloads

bipbop 0.5.3

bipbop is the best service for consulting brazilian data. See http://bipbop.com.br/ for...

6,002 Downloads

bipolar 0.1.0

MongoMapper plugin for first-class documents that can also be embedded

2,842 Downloads