Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These entries are used as queries for the Sun Grid Engine (SGE) system. Huge amount of queries are automatically splitted into subdirectories. With a specified command line to be executed, queries are submited to the SGE as an array job.
Gemfile gem 'bio-sge', '~> 0.0.0'
install gem install bio-sge