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The NCBO Annotator Gem is a Ruby client for NCBO's Annotator Web service. The NCBO Annotator (formerly referred to as the Open Biomedical Annotator (OBA)) is an ontology-based Web service that annotates public datasets with biomedical ontology concepts based on their textual metadata. The biomedical community can use the annotator service to tag their data automatically with ontology concepts. These concepts come from the Unified Medical Language System (UMLS) Metathesaurus and the National Center for Biomedical Ontology (NCBO) BioPortal ontologies. Such annotations facilitate translational discoveries by integrating annotated data.

installgem install ncbo_annotator
Authors

Paul R Alexander

11,745 total downloads 1,176 for this version
Owners

82e413b220ee180caa8255584ea49064

Gemfile
gem 'ncbo_annotator', '~> 1.0.13'
Versions
  1. 1.0.13 December 13, 2011 (5.5 KB)
  2. 1.0.12 December 12, 2011 (5.5 KB)
  3. 1.0.10 December 1, 2011 (5.5 KB)
  4. 1.0.9 December 1, 2011 (5.5 KB)
  5. 1.0.8 December 1, 2011 (5.5 KB)
Show all versions (14 total)
Runtime Dependencies
  1. libxml-ruby ~> 2.2.0