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bio-sam-mutation 0.4.1

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutations.

Versions:

  1. 0.4.1 - February 08, 2016 (26.5 KB)

Runtime Dependencies (6):

  • bio >= 1.4.2
  • bio-ensembl-rest = 0.2.0
  • bio-samtools ~> 2.3.4
  • oj ~> 2.14
  • rake ~> 0.9
  • trollop >= 0
  • Development Dependencies (6):

    Owners:

    Authors:

    • Stephen Pettitt

    SHA 256 checksum:

    e2b7031dc32fa5bfd535c47be11e71fc8e4310052b991fdbba9c5edea7da8b29

    Total downloads 1,705

    For this version 1,705

    Gemfile:
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    install:
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    License:

    MIT

    Required Ruby Version: >= 0

    Links: