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bio-sam-mutation 0.4.1

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for calling mutations in HGVS format and looking up consequences using Ensembl VEP REST API. Developed for calling mutations at an expected position in an alignment - e.g. Amplicon sequencing of CRISPR-induced mutations.

Gemfile:
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install:
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Versions:

  1. 0.4.1 - February 08, 2016 (26.5 KB)

Runtime Dependencies (6):

bio >= 1.4.2
bio-samtools ~> 2.3.4
oj ~> 2.14
rake ~> 0.9
trollop >= 0

Development Dependencies (6):

bundler >= 0
jeweler ~> 2.0
rdoc ~> 3.12
shoulda >= 0
simplecov >= 0
test-unit ~> 3.0

Owners:

Authors:

  • Stephen Pettitt

SHA 256 checksum:

e2b7031dc32fa5bfd535c47be11e71fc8e4310052b991fdbba9c5edea7da8b29

Total downloads 3,023

For this version 3,023

License:

MIT

Required Ruby Version: >= 0

Links: