Reverse dependencies for bio Latest version of the following gems require bio
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
132,652 Downloads
rbbt-sources 3.1.46
Data sources like PubMed, Entrez Gene, or Gene Ontology
96,904 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
75,427 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
73,667 Downloads
protk 1.4.4
Commandline tools for proteomics
49,563 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
48,958 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
45,075 Downloads
bio-polyploid-tools 1.1.2
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
43,059 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
38,851 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
37,336 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
36,638 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
35,028 Downloads
bacterial-annotator 0.8.9
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
32,219 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
32,010 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
29,929 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
26,926 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
25,956 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
23,730 Downloads
crb-blast 0.6.9
See summary
23,579 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
22,764 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
21,685 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
19,571 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
19,506 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
19,428 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
18,415 Downloads
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
17,544 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
16,415 Downloads
acnfp-trans-counter 0.2.0
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
16,415 Downloads
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
16,308 Downloads
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
15,983 Downloads