Reverse dependencies for bio Latest version of the following gems require bio
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
136,611 Downloads
rbbt-sources 3.1.50
Data sources like PubMed, Entrez Gene, or Gene Ontology
102,726 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
79,641 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
77,182 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
53,030 Downloads
bio-polyploid-tools 1.2.0
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
51,951 Downloads
protk 1.4.4
Commandline tools for proteomics
51,159 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
48,632 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
41,455 Downloads
bacterial-annotator 0.8.9
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
40,717 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
38,691 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
38,601 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
35,946 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
34,754 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
31,738 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
29,400 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
28,630 Downloads
crb-blast 0.6.9
See summary
26,009 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
24,717 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
23,665 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
23,456 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
20,706 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
20,096 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
20,014 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
19,965 Downloads
egor 0.9.0
'egor' is a program for calculating environment-specific substitution tables from user ...
18,289 Downloads
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
17,416 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
17,376 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
17,376 Downloads
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
17,098 Downloads