Reverse dependencies for bio Latest version of the following gems require bio
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
251.281 Downloads
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
239.407 Downloads
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
135.663 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
130.273 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
127.236 Downloads
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
112.372 Downloads
protk 1.4.4
Commandline tools for proteomics
104.286 Downloads
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
92.606 Downloads
bio-gadget 0.5.0
Gadgets for bioinformatics
87.861 Downloads
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
85.551 Downloads
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
83.922 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
80.265 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
64.381 Downloads
ms-core 0.0.19
basic, shared functionality for mspire libraries.
59.506 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
50.938 Downloads
crb-blast 0.6.9
See summary
50.775 Downloads
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
49.051 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
47.982 Downloads
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
45.508 Downloads
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
44.191 Downloads
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
41.582 Downloads
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
41.518 Downloads
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
41.172 Downloads
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
40.428 Downloads
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
39.219 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
34.802 Downloads
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
33.821 Downloads
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
32.650 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
32.122 Downloads
sciruby-full 0.2.11
Scientific gems for Ruby. This is the full installation with rigid version constraints.
29.739 Downloads