bioの被依存関係 以下のgemの最新版はbioを必要としています
rbbt-sources 3.4.2
Data sources like PubMed, Entrez Gene, or Gene Ontology
248,939 ダウンロード数
mspire 0.10.8.0
mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
237,901 ダウンロード数
snp-search 2.12.0
Use the snp-search tool to create, import, manipulate and query your SNP database
134,621 ダウンロード数
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
129,509 ダウンロード数
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
126,187 ダウンロード数
bacterial-annotator 1.0.1
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
111,543 ダウンロード数
protk 1.4.4
Commandline tools for proteomics
103,616 ダウンロード数
parse_fasta 2.5.2
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
91,921 ダウンロード数
bio-gadget 0.5.0
Gadgets for bioinformatics
87,453 ダウンロード数
iroki 0.0.36
Command line app and library code for Iroki, a phylogenetic tree customization program.
85,011 ダウンロード数
transrate 1.0.1
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
83,340 ダウンロード数
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
79,837 ダウンロード数
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
64,018 ダウンロード数
ms-core 0.0.19
basic, shared functionality for mspire libraries.
59,170 ダウンロード数
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
50,608 ダウンロード数
crb-blast 0.6.9
See summary
50,456 ダウンロード数
wrnap 1.2.2
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
48,767 ダウンロード数
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
47,742 ダウンロード数
full_lengther_next 1.0.6
FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and i...
45,210 ダウンロード数
bio-basespace-sdk 0.1.7
BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...
43,973 ダウンロード数
bio-band 0.1.11
Data mining and machine learning algorithms for JRuby
41,246 ダウンロード数
genevalidatorapp 2.1.8
A Web App wrapper for GeneValidator, a program for validating gene predictions.
41,155 ダウンロード数
rbfam 12.0.1.1
Light wrapper for RFam data in Ruby.
40,763 ダウンロード数
genevalidator 2.1.5
The tool validates the input predicted genes and provides useful information (length va...
40,107 ダウンロード数
fasta_util 0.5.2
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
39,047 ダウンロード数
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
34,576 ダウンロード数
ulla 0.9.9.2
'ulla' is a program for calculating environment-specific substitution tables from user ...
33,591 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
32,453 ダウンロード数
bio-ngs 0.5.2
bio-ngs provides a framework for handling NGS data with BioRuby
32,453 ダウンロード数
bio-faster 0.4.5
A fast parser for FastQ files
31,974 ダウンロード数