mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...
Data sources like PubMed, Entrez Gene, or Gene Ontology
Use the snp-search tool to create, import, manipulate and query your SNP database
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
Gadgets for bioinformatics
Commandline tools for proteomics
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
basic, shared functionality for mspire libraries.
a library and command-line tool for quality assessment of de-novo transcriptome assemblies
Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
Command line app and library code for Iroki, a phylogenetic tree customization program.
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...
A comprehensive wrapper w(RNA)pper for various RNA CLI programs.
GEM to annotate bacterial genome sequence based on a reference genome and complete the ...
Data mining and machine learning algorithms for JRuby
'ulla' is a program for calculating environment-specific substitution tables from user ...
A fast parser for FastQ files
Light wrapper for RFam data in Ruby.
'egor' is a program for calculating environment-specific substitution tables from user ...
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
A quick and dirty tool for analysis of transition and transversion frequency aross and ...
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
Fasta reader, ORF emitter, sequence translation
Pipeline to remove contaminations from EST libraries