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Reverse dependencies for bio 1.5.2

mspire 0.10.8.0

mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms...

123,503 Downloads

rbbt-sources 3.1.32

Data sources like PubMed, Entrez Gene, or Gene Ontology

78,354 Downloads

snp-search 2.12.0

Use the snp-search tool to create, import, manipulate and query your SNP database

69,735 Downloads

bio-samtools 2.6.2

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

67,641 Downloads

bio-gadget 0.5.0

Gadgets for bioinformatics

45,104 Downloads

protk 1.4.4

Commandline tools for proteomics

44,581 Downloads

bio-ucsc-api 0.6.5

Ruby UCSC API: accessing the UCSC Genome Database using Ruby

41,656 Downloads

bio-svgenes 0.4.1

This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...

35,891 Downloads

transrate 1.0.1

a library and command-line tool for quality assessment of de-novo transcriptome assemblies

32,941 Downloads

ms-core 0.0.19

basic, shared functionality for mspire libraries.

32,856 Downloads

bio-polyploid-tools 0.9.6

Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat

32,084 Downloads

parse_fasta 2.5.2

Provides nice, programmatic access to fasta and fastq files, as well as providing Seque...

31,438 Downloads

bio-gff3 0.9.1

GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...

28,043 Downloads

iroki 0.0.36

Command line app and library code for Iroki, a phylogenetic tree customization program.

26,532 Downloads

biointerchange 1.0.8

BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...

24,487 Downloads

bacterial-annotator 0.8.9

GEM to annotate bacterial genome sequence based on a reference genome and complete the ...

24,320 Downloads

fasta_util 0.5.2

Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on th...

22,267 Downloads

wrnap 1.2.2

A comprehensive wrapper w(RNA)pper for various RNA CLI programs.

20,478 Downloads

crb-blast 0.6.9

See summary

20,245 Downloads

bio-band 0.1.11

Data mining and machine learning algorithms for JRuby

19,730 Downloads

ulla 0.9.9.2

'ulla' is a program for calculating environment-specific substitution tables from user ...

18,312 Downloads

bio-faster 0.4.5

A fast parser for FastQ files

18,118 Downloads

rbfam 12.0.1.1

Light wrapper for RFam data in Ruby.

17,622 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

16,793 Downloads

egor 0.9.0

'egor' is a program for calculating environment-specific substitution tables from user ...

16,589 Downloads

acnfp-trans-counter 0.2.0

A quick and dirty tool for analysis of transition and transversion frequency aross and ...

15,868 Downloads

acnfp-trans-counter 0.2.0

A quick and dirty tool for analysis of transition and transversion frequency aross and ...

15,868 Downloads

bio-dbla-classifier 0.7.1

Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags

15,205 Downloads

bio-basespace-sdk 0.1.7

BaseSpace Ruby SDK is a Ruby based Software Development Kit to be used in the developme...

15,155 Downloads

bio-bigbio 0.1.6

Fasta reader, ORF emitter, sequence translation

14,797 Downloads

Total downloads 196,899

For this version 1,540

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License:

Ruby

Required Ruby Version: >= 0

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