Reverse dependencies for bio Latest version of the following gems require bio
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
15.550 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
15.279 Downloads
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
15.024 Downloads
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
14.920 Downloads
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
14.913 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
14.516 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14.452 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14.452 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
14.247 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14.009 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
13.881 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
13.873 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
13.494 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13.345 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13.345 Downloads
exodb 0.1.3
A library for exome sequencing data management
13.279 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13.064 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
12.810 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
12.810 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
12.491 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
12.409 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
11.928 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
11.912 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
11.606 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
11.524 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
11.268 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10.169 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
10.127 Downloads
semin-egor 0.9.3
A new ESST generator
10.031 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10.026 Downloads