bioの被依存関係 以下のgemの最新版はbioを必要としています
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
15,588 ダウンロード数
bio-graphics 1.4
Library for visualizing genomic regions
15,297 ダウンロード数
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
15,067 ダウンロード数
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
14,953 ダウンロード数
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
14,943 ダウンロード数
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
14,545 ダウンロード数
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14,472 ダウンロード数
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14,472 ダウンロード数
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
14,266 ダウンロード数
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14,033 ダウンロード数
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
13,899 ダウンロード数
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
13,893 ダウンロード数
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
13,509 ダウンロード数
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13,363 ダウンロード数
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13,363 ダウンロード数
exodb 0.1.3
A library for exome sequencing data management
13,302 ダウンロード数
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13,089 ダウンロード数
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
12,829 ダウンロード数
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
12,829 ダウンロード数
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
12,507 ダウンロード数
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
12,429 ダウンロード数
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
11,947 ダウンロード数
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
11,931 ダウンロード数
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
11,621 ダウンロード数
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
11,547 ダウンロード数
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
11,292 ダウンロード数
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10,184 ダウンロード数
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
10,147 ダウンロード数
semin-egor 0.9.3
A new ESST generator
10,050 ダウンロード数
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,046 ダウンロード数