Reverse dependencies for bio Latest version of the following gems require bio
cheripic 1.2.7
a library and commandline tool to pick causative mutation from bulks segregant sequencing
15.651 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
15.362 Downloads
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
15.164 Downloads
dirseq 0.4.3
FPKG (gene expression metric) calculator for metatranscriptomics
15.140 Downloads
neurohmmerapp 0.0.7
A Web App wrapper for NeuroHmmer, a program for validating gene predictions.
14.998 Downloads
publisci 0.1.6
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
14.577 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14.500 Downloads
bio-octopus 0.1.1
Running and parsing of the protein transmembrane domain predictor octopus
14.500 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
14.303 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14.069 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
13.945 Downloads
scaffolder-tools 0.1.3
Binary to use with scaffolder genome scaffolds
13.928 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
13.538 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13.463 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
13.463 Downloads
exodb 0.1.3
A library for exome sequencing data management
13.342 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13.128 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
12.969 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
12.969 Downloads
goruby 0.2.0
GoRuby makes it easy to interact with the Gene Ontology by using the infrastructure set...
12.527 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
12.458 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
11.974 Downloads
ruby-ensembl-api 1.0.1
ruby-ensembl-api provides a ruby API to the Ensembl databases (http://www.ensembl.org)
11.952 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
11.649 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
11.575 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
11.330 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10.213 Downloads
SilkSlider 0.2.2
Predict silk-like proteins from its amino acid sequence.
10.190 Downloads
semin-egor 0.9.3
A new ESST generator
10.079 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10.076 Downloads